1. J.-J. Huang, H.-Y. Hu, S.-Q. Lu, Y. Li, F. Tang, Y. Lu, B. Wei, Monitoring and evaluation of antibiotic-resistant bacteria at a municipal wastewater treatment plant in China, Environ. Int., 42 (2012) 31–36.
  2. M.-T. Guo, Q.-B. Yuan, J. Yang, Microbial selectivity of UV treatment on antibiotic-resistant heterotrophic bacteria in secondary effluents of a municipal wastewater treatment plant, Water Res., 47 (2013) 6388–6394.
  3. E. Szekeres, A. Baricz, C.M. Chiriac, A. Farkas, O. Opris, M.-L. Soran, A.-S. Andrei, K. Rudi, J.L. Balcázar, N. Dragos, C. Coman, Abundance of antibiotics, antibiotic resistance genes and bacterial community composition in wastewater effluents from different Romanian hospitals, Environ. Pollut., 225 (2017) 304–315.
  4. S.Y. Jia, X.-X. Zhang, Y. Miao, Y.T. Zhao, L. Ye, B. Li, T. Zhang, Fate of antibiotic resistance genes and their associations with bacterial community in livestock breeding wastewater and its receiving river water, Water Res., 124 (2017) 259–268.
  5. A. Di Cesare, D. Fontaneto, J. Doppelbauer, G. Corno, Fitness and recovery of bacterial communities and antibiotic resistance genes in urban wastewaters exposed to classical disinfection treatments, Environ. Sci. Technol., 50 (2016) 10153–10161.
  6. S. Khan, T.K. Beattie, C.W. Knapp, Relationship between antibiotic- and disinfectant-resistance profiles in bacteria harvested from tap water, Chemosphere, 152 (2016) 132–141.
  7. A. Fiorentino, G. Ferro, M.C. Alferez, M.I. Polo-López, P. Fernández-Ibañez, L. Rizzo, Inactivation and regrowth of multidrug resistant bacteria in urban wastewater after disinfection by solar-driven and chlorination processes, J. Photochem. Photobiol., B, 148 (2015) 43–50.
  8. P. Tallon, B. Magajna, C. Lofranco, K.T. Leung, Microbial indicators of faecal contamination in water: a current perspective, Water Air Soil Pollut., 166 (2005) 139–166.
  9. M.N. Byappanahalli, M.B. Nevers, A. Korajkic, Z.R. Staley, V.J. Harwood, Enterococci in the environment, Microbiol. Mol. Biol. Rev., 76 (2012) 685–706.
  10. E.W. Rice, R. Baird, A. Eaton, L. Clesceri, Standard Methods for the Examination of Water and Wastewater, American Public Health Association, American Water Works Association and Water Environment Federation, Washington, DC, USA, 2012.
  11. I. Vaz-Moreira, C. Egas, O.C. Nunes, C.M. Manaia, Bacterial diversity from the source to the tap: a comparative study based on 16S rRNA gene-DGGE and culture-dependent methods, FEMS Microbiol. Ecol., 83 (2013) 361–374.
  12. B.F. Tan, C. Ng, J.P. Nshimyimana, L.L. Loh, K.Y.-H. Gin, J.R. Thompson, Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities, Front. Microbiol., 6 (2015) 1027, doi: 10.3389/fmicb.2015.01027.
  13. S.R. Vartoukian, R.M. Palmer, W.G. Wade, Strategies for culture of ‘unculturable’ bacteria, FEMS Microbiol. Lett., 309 (2010) 1–7.
  14. D. Li, T.Z. Tong, S.Y. Zeng, Y.W. Lin, S.X. Wu, M. He, Quantification of viable bacteria in wastewater treatment plants by using propidium monoazide combined with quantitative PCR (PMA-qPCR), J. Environ. Sci., 26 (2014) 299–306.
  15. V.J. Harwood, A.D. Levine, T.M. Scott, V. Chivukula, J. Lukasik, S.R. Farrah, J.B. Rose, Validity of the indicator organism paradigm for pathogen reduction in reclaimed water and public health protection, Appl. Environ. Microbiol., 71 (2005) 3163–3170.
  16. T.L. Greay, A.W. Gofton, A. Zahedi, A. Paparini, K.L. Linge, C.A. Joll, U.M. Ryan, Evaluation of 16S next-generation sequencing of hypervariable region 4 in wastewater samples: an unsuitable approach for bacterial enteric pathogen identification, Sci. Total Environ., 670 (2019) 1111–1124.
  17. Q. Hu, X.-X. Zhang, S.Y. Jia, K.L. Huang, J.Y. Tang, P. Shi, L. Ye, H.Q. Ren, Metagenomic insights into ultraviolet disinfection effects on antibiotic resistome in biologically treated wastewater, Water Res., 101 (2016) 309–317.
  18. G. Muyzer, E.C. de Waal, A.G. Uitterlinden, Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol., 59 (1993) 695–700.
  19. J.L. Sanz, T. Köchling, Next-generation sequencing and waste/ wastewater treatment: a comprehensive overview, Rev. Environ. Sci. Biotechnol., 18 (2019) 635–680.
  20. A. Moura, M. Tacão, I. Henriques, J. Dias, P. Ferreira, A. Correia, Characterization of bacterial diversity in two aerated lagoons of a wastewater treatment plant using PCR–DGGE analysis, Microbiol. Res., 164 (2009) 560–569.
  21. T.-H. Chiao, T.M. Clancy, A. Pinto, C.W. Xi, L. Raskin, Differential resistance of drinking water bacterial populations to monochloramine disinfection, Environ. Sci. Technol., 48 (2014) 4038–4047.
  22. T.-Z. Tong, S.-X. Wu, D. Li, M. He, T. Yang, H.-C. Shi, Evaluation of pathogen disinfection efficacy by chlorine and monochloramine disinfection based on quantitative PCR combined with propidium monoazide (PMA-qPCR), Huan Jing Ke Xue, 32 (2011) 1120–1126.
  23. O. Ayyildiz, B. Ileri, S. Sanik, Impacts of water organic load on chlorine dioxide disinfection efficacy, J. Hazard. Mater., 168 (2009) 1092–1097.
  24. B. Barbeau, R. Desjardins, C. Mysore, M. Prévost, Impacts of water quality on chlorine and chlorine dioxide efficacy in natural waters, Water Res., 39 (2005) 2024–2033.
  25. P. Kulkarni, N.D. Olson, J.N. Paulson, M. Pop, C. Maddox, E. Claye, R.E. Rosenberg Goldstein, M. Sharma, S.G. Gibbs, E.F. Mongodin, A.R. Sapkota, Conventional wastewater treatment and reuse site practices modify bacterial community structure but do not eliminate some opportunistic pathogens in reclaimed water, Sci. Total Environ., 639 (2018) 1126–1137.
  26. E.M. Aieta, J.D. Berg, A review of chlorine dioxide in drinking water treatment, J. Am. Water Works Assn., 78 (1986) 62–72.
  27. M.J. Bekink, D.J. Nozaic, Assessment of a chlorine dioxide proprietary product for water and wastewater disinfection, Water SA, 39 (2013) 375–377.
  28. A. Rieder, T. Schwartz, K. Schön‐Hölz, S.-M. Marten, J. Süss, C. Gusbeth, W. Kohnen, W. Swoboda, U. Obst, W. Frey, Molecular monitoring of inactivation efficiencies of bacteria during pulsed electric field treatment of clinical wastewater, J. Appl. Microbiol., 105 (2008) 2035–2045.
  29. A. Nocker, T. Richter-Heitmann, R. Montijn, F. Schuren, R. Kort, Discrimination between live and dead cellsin bacterial communities from environmental water samples analyzed by 454 pyrosequencing, Int. Microbiol., 13 (2010) 59–65.
  30. A. Nocker, P. Sossa-Fernandez, M.D. Burr, A.K. Camper, Use of propidium monoazide for live/dead distinction in microbial ecology, Appl. Environ. Microbiol., 73 (2007) 5111–5117.
  31. M.M. Burtscher, F. Zibuschka, R.L. Mach, G. Lindner, A.H. Farnleitner, Heterotrophic plate count vs. in situ bacterial 16S rRNA gene amplicon profiles from drinking water reveal completely different communities with distinct spatial and temporal allocations in a distribution net, Water SA, 35 (2009) 495–504.
  32. S.A. Dar, J.G. Kuenen, G. Muyzer, Nested PCR-denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities, Appl. Environ. Microbiol., 71 (2005) 2325–2330.
  33. G.R. Finch, E.K. Black, L. Gyürék, M. Belosevic, Ozone inactivation of Cryptosporidium parvum in demand-free phosphate buffer determined by in vitro excystation and animal infectivity, Appl. Environ. Microbiol., 59 (1993) 4203–4210.
  34. L.M. Hornstra, P.W.M.H. Smeets, G.J. Medema, Inactivation of bacteriophage MS2 upon exposure to very low concentrations of chlorine dioxide, Water Res., 45 (2011) 1847–1855.
  35. L. Alcalde, M. Folch, J.C. Tapias, E. Huertas, A. Torrens, M. Salgot, Wastewater reclamation systems in small communities, Water Sci. Technol., 55 (2007) 149–154.
  36. A. Bischoff, J.H. Fan, P. Cornel, M. Wagner, L.M. Ma, Disinfection of treated wastewater as an essential purification step for safe urban reuse: a comparative pilot study of UVand ClO2-disinfection systems for urban reuse applications in China, J. Water Reuse Desal., 3 (2013) 325–335.
  37. G. Gordon, A.A. Rosenblatt, Chlorine dioxide: the current state of the art, Ozone Sci. Eng., 27 (2005) 203–207.
  38. J. Hoigné, H. Bader, Kinetics of reactions of chlorine dioxide (OClO) in water—I. Rate constants for inorganic and organic compounds, Water Res., 28 (1994) 45–55.
  39. V.K. Sharma, M. Sohn, Reactivity of chlorine dioxide with amino acids, peptides, and proteins, Environ. Chem. Lett., 10 (2012) 255–264.
  40. J. Świetlik, A. Dąbrowska, U. Raczyk-Stanisławiak, J. Nawrocki, Reactivity of natural organic matter fractions with chlorine dioxide and ozone, Water Res., 38 (2004) 547–558.
  41. A. Nocker, C.-Y. Cheung, A.K. Camper, Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells, J. Microbiol. Methods, 67 (2006) 310–320.
  42. H.R. Lin, C.S. Ye, S. Chen, S.H. Zhang, X. Yu, Viable but nonculturable E. coli induced by low level chlorination have higher persistence to antibiotics than their culturable counterparts, Environ. Pollut., 230 (2017) 242–249.
  43. Y.-w. Lin, D. Li, A.Z. Gu, S.-y. Zeng, M. He, Bacterial regrowth in water reclamation and distribution systems revealed by viable bacterial detection assays, Chemosphere, 144 (2016) 2165–2174.
  44. B. Casini, A. Baggiani, M. Totaro, A. Mansi, A.L. Costa, F. Aquino, M. Miccoli, P. Valentini, F. Bruschi, P.L. Lopalco, G. Privitera, Detection of viable but non-culturable legionella in hospital water network following monochloramine disinfection, J. Hosp. Infect., 98 (2018) 46–52.
  45. M. Berney, F. Hammes, F. Bosshard, H.-U. Weilenmann, T. Egli, Assessment and interpretation of bacterial viability by using the LIVE/DEAD BacLight kit in combination with flow cytometry, Appl. Environ. Microbiol., 73 (2007) 3283–3290.
  46. I. Ofori, S. Maddila, J. Lin, S.B. Jonnalagadda, Chlorine dioxide oxidation of Escherichia coli in water – a study of the disinfection kinetics and mechanism, J. Environ. Sci. Health., Part A, 52 (2017) 598–606.
  47. Z. Bohrerova, K.G. Linden, Assessment of DNA damage and repair in Mycobacterium terrae after exposure to UV irradiation, J. Appl. Microbiol., 101 (2006) 995–1001.
  48. J.C. Fisher, A. Levican, M.J. Figueras, S.L. McLellan, Population dynamics and ecology of Arcobacter in sewage, Front. Microbiol., 5 (2014) 525.
  49. L. Cai, F. Ju, T. Zhang, Tracking human sewage microbiome in a municipal wastewater treatment plant, Appl. Microbiol. Biotechnol., 98 (2014) 3317–3326.
  50. T.P. Ramees, K. Dhama, K. Karthik, R.S. Rathore, A. Kumar, M. Saminathan, R. Tiwari, Y.S. Malik, R.K. Singh, Arcobacter: an emerging food-borne zoonotic pathogen, its public health concerns and advances in diagnosis and control - a comprehensive review, Vet. Q., 37 (2017) 136–161.
  51. H. Wisplinghoff, 181 – Pseudomonas spp., Acinetobacter spp. and Miscellaneous Gram-Negative Bacilli A2 - J. Cohen, W.G. Powderly, S.M. Opal, Eds., Infectious Diseases, 4th ed., Elsevier, UK, 2017, pp. 1579–1599.e1572.
  52. J. Xue, B.W. Schmitz, K. Caton, B. Zhang, J. Zabaleta, J. Garai, C.M. Taylor, T. Romanchishina, C.P. Gerba, I.L. Pepper, S.P. Sherchan, Assessing the spatial and temporal variability of bacterial communities in two Bardenpho wastewater treatment systems via Illumina MiSeq sequencing, Sci. Total Environ., 657 (2019) 1543–1552.
  53. J.-J. Huang, H.-Y. Hu, F. Tang, Y. Li, S.-Q. Lu, Y. Lu, Inactivation and reactivation of antibiotic-resistant bacteria by chlorination in secondary effluents of a municipal wastewater treatment plant, Water Res., 45 (2011) 2775–2781.
  54. J.E. Moore, P. Mastoridis, Clinical implications of Pseudomonas aeruginosa location in the lungs of patients with cystic fibrosis, J. Clin. Pharm. Ther., 42 (2017) 259–267.
  55. A.D. Russell, Similarities and differences in the responses of microorganisms to biocides, J. Antimicrob. Chemother., 52 (2003) 750–763.
  56. A.D. Russell, Bacterial resistance to disinfectants: present knowledge and future problems, J. Hosp. Infect., 43 (1999) S57–S68.
  57. G. McDonnell, A.D. Russell, Antiseptics and disinfectants: activity, action, and resistance, Clin. Microbiol. Rev., 12 (1999) 147–179.